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Atypical pneumonia

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Escalate

Severe hypoxaemia, shock, encephalopathy, rapidly progressive multilobar disease or extrapulmonary organ failure requires immediate sepsis and critical-care management. Suspected Legionnaires' disease should receive prompt intracellular-active treatment and urgent notification through the applicable UK-nation pathway without waiting for confirmation.

Synopsis

Recognise pneumonia caused by intracellular or exposure-linked pathogens without relying on an unreliable 'atypical' phenotype, choose targeted microbiology, provide intracellular-active therapy, and trigger UK public-health action where required.

  • Atypical pneumonia commonly refers to Legionella species, Mycoplasma pneumoniae, Chlamydia psittaci and Coxiella burnetii; clinical features overlap substantially with ordinary bacterial and viral pneumonia.
  • Ask about hotel, hospital, spa or water-aerosol exposure for Legionella; birds for psittacosis; and sheep, cattle, goats or birthing products for Q fever.
  • Legionella may cause severe pneumonia with diarrhoea, confusion, hyponatraemia, renal or liver disturbance, but none of these features is sufficiently specific to diagnose it.

Key red flags

Legionnaires' disease

High fever, cough and severe pneumonia after travel, hotel, healthcare, spa or aerosolised-water exposure, sometimes with diarrhoea, confusion, hyponatraemia or renal and hepatic disturbance.

Investigation priorities

01
Exposure and travel historyFirst step

Direct organism-specific testing and identify a reportable exposure or outbreak.

Management branches

PresentationTreat severity before taxonomy

Pneumonia with a possible atypical respiratory pathogen.

  1. Assess ABCDE, oxygen requirement, NEWS2 and CRB65/CURB65 where appropriate; manage shock or respiratory failure immediately and obtain chest imaging.
  2. Take a focused exposure history and send proportionate microbiology before antibiotics when this creates no harmful delay.

Key medicines

ClarithromycinA common adult CAP regimen is 500 mg orally or IV twice daily, usually within a 5-day uncomplicated CAP course; confirmed Legionella may require a specialist-defined longer course.
DoxycyclineA typical adult regimen begins with 200 mg on day 1 then 100 mg once daily, with dose and duration adjusted to organism, severity and current local guidance.
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Sources and review status5 sources · checked 27 Aug 2026 · clinical review pending
Sources

Sources and review status

National guidance is shown before implementation-dependent detail. Typical adult dose examples remain subject to patient factors, contraindications and the live BNF or specialist protocol. Source check completed 27 Aug 2026; clinical approval remains outstanding.

Authoring stateRapid draftClinical stateAwaiting reviewJurisdictionUnited Kingdom